115 research outputs found
The Local Field Potential Reflects Surplus Spike Synchrony
The oscillatory nature of the cortical local field potential (LFP) is
commonly interpreted as a reflection of synchronized network activity, but its
relationship to observed transient coincident firing of neurons on the
millisecond time-scale remains unclear. Here we present experimental evidence
to reconcile the notions of synchrony at the level of neuronal spiking and at
the mesoscopic scale. We demonstrate that only in time intervals of excess
spike synchrony, coincident spikes are better entrained to the LFP than
predicted by the locking of the individual spikes. This effect is enhanced in
periods of large LFP amplitudes. A quantitative model explains the LFP dynamics
by the orchestrated spiking activity in neuronal groups that contribute the
observed surplus synchrony. From the correlation analysis, we infer that
neurons participate in different constellations but contribute only a fraction
of their spikes to temporally precise spike configurations, suggesting a dual
coding scheme of rate and synchrony. This finding provides direct evidence for
the hypothesized relation that precise spike synchrony constitutes a major
temporally and spatially organized component of the LFP. Revealing that
transient spike synchronization correlates not only with behavior, but with a
mesoscopic brain signal corroborates its relevance in cortical processing.Comment: 45 pages, 8 figures, 3 supplemental figure
LFP beta amplitude is predictive of mesoscopic spatio-temporal phase patterns
Beta oscillations observed in motor cortical local field potentials (LFPs)
recorded on separate electrodes of a multi-electrode array have been shown to
exhibit non-zero phase shifts that organize into a planar wave propagation.
Here, we generalize this concept by introducing additional classes of patterns
that fully describe the spatial organization of beta oscillations. During a
delayed reach-to-grasp task in monkey primary motor and dorsal premotor
cortices we distinguish planar, synchronized, random, circular, and radial
phase patterns. We observe that specific patterns correlate with the beta
amplitude (envelope). In particular, wave propagation accelerates with growing
amplitude, and culminates at maximum amplitude in a synchronized pattern.
Furthermore, the occurrence probability of a particular pattern is modulated
with behavioral epochs: Planar waves and synchronized patterns are more present
during movement preparation where beta amplitudes are large, whereas random
phase patterns are dominant during movement execution where beta amplitudes are
small
Predicting voluntary movements from motor cortical activity with neuromorphic hardware
This document is the Accepted Manuscript version of the following article: A. Lungu, A. Riehle, M. P. Nawrot and M. Schmuker, "Predicting voluntary movements from motor cortical activity with neuromorphic hardware," in IBM Journal of Research and Development, Vol. 61, no. 2/3, pp. 5:1-5:12, March-May 1 2017. The version of record is available online at doi: 10.1147/JRD.2017.2656063. © 2017 by International Business Machines Corporation. Personal use of this material is permitted. Permission from IEEE must be obtained for all other uses, in any current or future media, including reprinting/republishing this material for advertising or promotional purposes, creating new collective works, for resale or redistribution to servers or lists, or reuse of any copyrighted component of this work in other works.Neurons in the mammalian motor cortices encode physical parameters of voluntary movements during planning and execution of a motor task. Brain-machine interfaces can decode limb movements from the activity of these neurons in real time. The future goal is to control prosthetic devices in severely paralyzed patients or to restore communication if the ability to speak or make gestures is lost. Here, we implemented a spiking neural network that decodes movement intentions from individual neuronal activity recorded in the motor cortex of a monkey. The network runs on neuromorphic hardware and performs its computations in a purely spike-based fashion. It incorporates an insect-brain-inspired, three-layer architecture with 176 neurons. Cortical signals are filtered using lateral inhibition, and the network is trained in a supervised fashion to predict two opposing directions of the monkey’s arm reaching movement before the movement is carried out. Our network operates on the actual spikes that have been emitted by motor cortical neurons, without the need to construct intermediate non-spiking representations. Using a pseudo-population of 12 manually-selected neurons, it reliably predicts the movement direction with an accuracy of 89.32 % on unseen data after only 100 training trials. Our results provide a proof of concept for the first-time use of a neuromorphic device for decoding movement intentions.Peer reviewe
Behavioral Context Determines Network State and Variability Dynamics in Monkey Motor Cortex
Variability of spiking activity is ubiquitous throughout the brain but little is known about its contextual dependance. Trial-to-trial spike count variability, estimated by the Fano Factor (FF), and within-trial spike time irregularity, quantified by the coefficient of variation (CV), reflect variability on long and short time scales, respectively. We co-analyzed FF and the local coefficient of variation (CV2) in monkey motor cortex comparing two behavioral contexts, movement preparation (wait) and execution (movement). We find that the FF significantly decreases from wait to movement, while the CV2 increases. The more regular firing (expressed by a low CV2) during wait is related to an increased power of local field potential (LFP) beta oscillations and phase locking of spikes to these oscillations. In renewal processes, a widely used model for spiking activity under stationary input conditions, both measures are related as FF ≈ CV2. This expectation was met during movement, but not during wait where FF ≫ CV22. Our interpretation is that during movement preparation, ongoing brain processes result in changing network states and thus in high trial-to-trial variability (expressed by a high FF). During movement execution, the network is recruited for performing the stereotyped motor task, resulting in reliable single neuron output. Our interpretation is in the light of recent computational models that generate non-stationary network conditions
Handling Metadata in a Neurophysiology Laboratory
To date, non-reproducibility of neurophysiological research is a matter of intense discussion in the scientific community. A crucial component to enhance reproducibility is to comprehensively collect and store metadata, that is, all information about the experiment, the data, and the applied preprocessing steps on the data, such that they can be accessed and shared in a consistent and simple manner. However, the complexity of experiments, the highly specialized analysis workflows and a lack of knowledge on how to make use of supporting software tools often overburden researchers to perform such a detailed documentation. For this reason, the collected metadata are often incomplete, incomprehensible for outsiders or ambiguous. Based on our research experience in dealing with diverse datasets, we here provide conceptual and technical guidance to overcome the challenges associated with the collection, organization, and storage of metadata in a neurophysiology laboratory. Through the concrete example of managing the metadata of a complex experiment that yields multi-channel recordings from monkeys performing a behavioral motor task, we practically demonstrate the implementation of these approaches and solutions with the intention that they may be generalized to other projects. Moreover, we detail five use cases that demonstrate the resulting benefits of constructing a well-organized metadata collection when processing or analyzing the recorded data, in particular when these are shared between laboratories in a modern scientific collaboration. Finally, we suggest an adaptable workflow to accumulate, structure and store metadata from different sources using, by way of example, the odML metadata framework
Estimating the contribution of assembly activity to cortical dynamics from spike and population measures
The hypothesis that cortical networks employ the coordinated activity of groups of neurons, termed assemblies, to process information is debated. Results from multiple single-unit recordings are not conclusive because of the dramatic undersampling of the system. However, the local field potential (LFP) is a mesoscopic signal reflecting synchronized network activity. This raises the question whether the LFP can be employed to overcome the problem of undersampling. In a recent study in the motor cortex of the awake behaving monkey based on the locking of coincidences to the LFP we determined a lower bound for the fraction of spike coincidences originating from assembly activation. This quantity together with the locking of single spikes leads to a lower bound for the fraction of spikes originating from any assembly activity. Here we derive a statistical method to estimate the fraction of spike synchrony caused by assemblies—not its lower bound—from the spike data alone. A joint spike and LFP surrogate data model demonstrates consistency of results and the sensitivity of the method. Combining spike and LFP signals, we obtain an estimate of the fraction of spikes resulting from assemblies in the experimental data
Modelling human choices: MADeM and decision‑making
Research supported by FAPESP 2015/50122-0 and DFG-GRTK 1740/2. RP and AR are also part of the Research, Innovation and Dissemination Center for Neuromathematics FAPESP grant (2013/07699-0). RP is supported by a FAPESP scholarship (2013/25667-8). ACR is partially supported by a CNPq fellowship (grant 306251/2014-0)
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